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July 30, 2024: NPS@ updated (see NEWS).
[Abstract] [NPS@ help] [Original server]
Database : BCL-2 family (BCL2DB) Bacterial tyrosine kinases (BYKdb) Hepatitis B virus (HBVdb) Hepatitis C virus proteins (euHCVdb) Hepatitis C virus polyproteins (euHCVdb) Swiss-Prot UniProtKB clustered at 90+% sequence identity (UniProt90) UniProtKB clustered at 70+% sequence identity (UniProt70) UniProtKB clustered at 50+% sequence identity (UniProt50) UniProtKB Fungi (UniProtKB/Fungi) UniProtKB Metazoa (UniProtKB/Metazoa) UniProtKB Plants (UniProtKB/Plants) UniProtKB Prokaryotes (UniProtKB/Prokaryotes) UniProtKB Unclassified (UniProtKB/Unclassified) UniProtKB Viruses (UniProtKB/Viruses) AlphaFold 2 database / AlphaFoldDB (AF2DB) ESM Metagenomic Atlas high quality models clustered at 30+% sequence identity (ESMMAHQ30) Protein Data Bank ENT file coordinates (NPSA3DB) Protein Data Bank ENT file coordinates clustered at 95+% sequence identity (NPSA3D95) Protein Data Bank ENT file coordinates clustered at 25+% sequence identity (NPSA3D25) Protein Data Bank SEQRES (PDBSEQRES) Representative proteins with 3-D coordinates (PDBSEQRES95 + AF2DB50 + ESMMAHQ30)
Sequence name (optional) : Paste a protein sequence below : help
FASTA parameters: ktup : 123 Matrix (-s) : BLOSUM50BLOSUM62BLOSUM80PAM120PAM250 Band alignment for protein (-XA) : (default Smith-Waterman) Expectation value upper limit (-E, real) : 1e-061e-031e-021e-011.010.0100.01000.010000.0 Number of results to display (-b, int == -d, int) : 50010002000500010000 Turn on histogram display (-H) :