Network Protein Sequence Analysis image
NPS@ at CRCL is a fork of the original NPS@ server

PSI-BLAST sequence homology search

[Abstract] [NPS@ help] [Original server]

workflow

Search with PSSM stage parameters:
Database : databases

Sequence name (optional) :
Paste a protein sequence below : help

Expectation value (-e, real) :
Number of results to show (-v, int == -b, int) :

PSSM building stage parameters (using non-redundant UniProtKB maximum 50% identity and at most 10,000 alignments):
Filter query sequence (-F) : (DUST with BLASTN, SEG with others)
Matrix (-M) :
Expectation value threshold for inclusion in multipass model(-h, real) :
Maximum number of passes to use in multipass version (-j, int) : (limited to 7)


Last modification time : Wed Dec 7 15:24:21 2022. Current time : Mon Feb 6 11:02:18 2023. User : public@3.222.251.91.

© 1998-2022 Centre de Recherche en Cancerologie de Lyon logo Pole Rhone-Alpes de BioInformatique logo Centre National de la Recherche Scientifique logo Institut national de la sante et de la recherche medicale logo Universite Claude Bernard Lyon 1 logo Legal notice