Search with PSSM stage parameters:
Database : BCL-2 database protein sequences (BCL2DB) Bacterial tyrosine kinase database protein sequences (BYKdb) Hepatitis B virus database protein sequences (HBVdb) Hepatitis C virus database polyprotein sequences (euHCVdb) Hepatitis C virus database protein sequences (euHCVdb) UniProtKB/Swiss-Prot protein sequences (Swiss-Prot) UniProt Knowledgebase protein sequences (UniProtKB/Swiss-Prot + UniProtKB/TrEMBL) AlphaFold2 database protein sequences (AF2DB) ESM Metagenomic Atlas 30% high confidence protein sequences (ESM Atlas) Protein Data Bank (PDB) ENT coordinate sequences Protein Data Bank (PDB) ENT coordinate sequences - maximum 95% identity Protein Data Bank (PDB) ENT coordinate sequences - maximum 25% identity Protein Data Bank SEQRES sequences Protein sequences with 3D coordinates (PDB SEQRES 95% + AlphaFold2 DB 50% + ESM Atlas 30% high confidence) databases

Sequence name (optional) :
Paste a protein sequence below : help

Expectation value (-e, real) : 1e-061e-031e-021e-011.010.0100.0
Number of results to show (-v, int == -b, int) : 10002000500010000

PSSM building stage parameters (using non-redundant UniProtKB maximum 50% identity and at most 10,000 alignments):
Filter query sequence (-F) : TrueFalse (DUST with BLASTN, SEG with others)
Matrix (-M) : BLOSUM45BLOSUM62BLOSUM80PAM30PAM70
Expectation value threshold for inclusion in multipass model(-h, real) : 0.0010.0020.010.1
Maximum number of passes to use in multipass version (-j, int) : 1234567 (limited to 7)