Network Protein Sequence Analysis (NPSA, NPS@) image
This site is a fork of the original PRABI NPS@ server


May 17th, 2024: NPS@ updated (see NEWS).

PSI-BLAST sequence homology search

[Abstract] [NPS@ help] [Original server]

Search with PSSM stage parameters:
Database :
Sequence name (optional) :
Paste a protein sequence below : help

Expectation value (-e, real) :
Number of results to show (-v, int == -b, int) :

PSSM building stage parameters (using non-redundant UniProtKB maximum 50% identity and at most 500 alignments):
Filter query sequence (-F) : (DUST with BLASTN, SEG with others)
Matrix (-M) :
Expectation value threshold for inclusion in multipass model(-h, real) :
Maximum number of passes to use in multipass version (-j, int) : (limited to 7)

Last modification time : Fri May 17 11:32:10 2024. Current time : Sun May 19 10:48:04 2024. User : public@

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