Search with PSSM stage parameters:
Database : BCL-2 family (BCL2DB) Bacterial tyrosine kinases (BYKdb) Hepatitis B virus (HBVdb) Hepatitis C virus proteins (euHCVdb) Hepatitis C virus polyproteins (euHCVdb) Swiss-Prot UniProtKB clustered at 90+% sequence identity (UniProt90) UniProtKB clustered at 70+% sequence identity (UniProt70) UniProtKB clustered at 50+% sequence identity (UniProt50) UniProtKB Fungi (UniProtKB/Fungi) UniProtKB Metazoa (UniProtKB/Metazoa) UniProtKB Plants (UniProtKB/Plants) UniProtKB Prokaryotes (UniProtKB/Prokaryotes) UniProtKB Unclassified (UniProtKB/Unclassified) UniProtKB Viruses (UniProtKB/Viruses) AlphaFold 2 database / AlphaFoldDB (AF2DB) ESM Metagenomic Atlas high quality models clustered at 30+% sequence identity (ESMMAHQ30) Protein Data Bank ENT file coordinates (NPSA3DB) Protein Data Bank ENT file coordinates clustered at 95+% sequence identity (NPSA3D95) Protein Data Bank ENT file coordinates clustered at 25+% sequence identity (NPSA3D25) Protein Data Bank SEQRES (PDBSEQRES) Representative proteins with 3-D coordinates (PDBSEQRES95 + AF2DB50 + ESMMAHQ30)
Sequence name (optional) :
Paste a protein sequence below : help

Expectation value (-e, real) : 1e-061e-031e-021e-011.010.0100.0
Number of results to show (-v, int == -b, int) : 10002000500010000

PSSM building stage parameters (using non-redundant UniProtKB maximum 50% identity and at most 10,000 alignments):
Filter query sequence (-F) : TrueFalse (DUST with BLASTN, SEG with others)
Matrix (-M) : BLOSUM45BLOSUM50BLOSUM62BLOSUM80BLOSUM90PAM30PAM70PAM250
Expectation value threshold for inclusion in multipass model(-h, real) : 0.0010.0020.010.1
Maximum number of passes to use in multipass version (-j, int) : 1234567 (limited to 7)