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November 27th, 2023: NPS@ updated (see NEWS).
When you read in NPS@ the sentence "Paste protein/nucleotide sequences in Pearson/Fasta format
below" or the sentence "Upload your own Pearson/FASTA file" you have to paste or upload sequences with the format indicated below.
SEQUENCE DATA :
>CCPA_BACME GLUCOSE-RESISTANCE AMYLASE REGULATOR (CATABOLITE CONTROL PROTEIN). MNVTIYDVAREASVSMATVSRVVNGNPNVKPSTRKKVLETIERLGYRPNAVARGLASKKT TTVGVIIPDISNIFYAELARGIEDIATMYKYNIILSNSDQNQDKELHLLNNMLGKQVDGI IFMSGNVTEEHVEELKKSPVPVVLAASIESTNQIPSVTIDYEQAAFDAVQSLIDSGHKNI AFVSGTLEEPINHAKKVKGYKRALTESGLPVRDSYIVEGDYTYDSGIEAVEKLLEEDEKP TAIFVGTDEMALGVIHGAQDRGLNVPNDLEIIGFDNTRLSTMVRPQLTSVVQPMYDIGAV AMRLLTKYMNKETVDSSIVQLPHRIEFRQSTK >CCPA_BACSU GLUCOSE-RESISTANCE AMYLASE REGULATOR (CATABOLITE CONTROL PROTEIN). MSNITIYDVAREANVSMATVSRVVNGNPNVKPTTRKKVLEAIERLGYRPNAVARGLASKK TTTVGVIIPDISSIFYSELARGIEDIATMYKYNIILSNSDQNMEKELHLLNTMLGKQVDG IVFMGGNITDEHVAEFKRSPVPIVLAASVEEQEETPSVAIDYEQAIYDAVKLLVDKGHTD IAFVSGPMAEPINRSKKLQGYKRALEEANLPFNEQFVAEGDYTYDSGLEALQHLMSLDKK PTAILSATDEMALGIIHAAQDQGLSIPEDLDIIGFDNTRLSLMVRPQLSTVVQPTYDIGA VAMRLLTKLMNKEPVEEHIVELPHRIELRKSTKS >CCPA_STRMU PROBABLE CATABOLITE CONTROL PROTEIN A. MNTDDTITIYDVAREAGVSMATVSRVVNGNKNVKENTRKKVLEVIDRLDYRPNAVARGLA SKKTTTVGVVIPNIANAYFSILAKGIDDIATMYKYNIVLASSDEDDDKEVNVINTLFAKQ VDGIIFMGHHLTEKIRAEFSRARTPVVLSGTVDLEHQLPSVNIDHSKAAQDAVALLAKHH DKIAFVSGPLIDDINGKVRLAGYKEGLKKKGLPFKEGLVFEAQYKYQEGYQLAQRVINSG ATAAYVAEDELAAGLLNGLFAAGRKVPEDFEIITSNDSTIALYTRPNMTSISQPIYDLGA VAMRMLTKIMNKEELEEKEIVLNHGIKKRGTTK >DEGA_BACSU DEGRADATION ACTIVATOR. MKTTIYDVAKAAGVSITTVSRVINNTGRISDKTRQKVMNVMNEMAYTPNVHAAALTGKRT NMIALVAPDISNPFYGELAKSIEERADELGFQMLICSTDYDPKKETKYFSVLKQKKVDGI IFATGIESHDSMSALEEIASEQIPIAMISQDKPLLPMDIVVIDDVRGGYEAAKHLLSLGH TNIACIIGDGSTTGEKNRIKGFRQAMEEAGVPIDESLIIQTRFSLESGKEEAGKLLDRNA PTAIFAFNDVLACAAIQAARIRGIKVPDDLSIIGFDNTILAEMAAPPLTTVAQPIKEMGA ERHRTAGRSNRGKRKAKQKIVLPPELVVRHSTSPLNT >FRUR_ECOLI FRUCTOSE REPRESSOR. MKLDEIARLAGVSRTTASYVINGKAKQYRVSDKTVEKVMAVVREHNYHPNAVAAGLRAGR TRSIGLVIPDLENTSYTRIANYLERQARQRGYQLLIACSEDQPDNEMRCIEHLLQRQVDA IIVSTSLPPEHPFYQRWANDPFPIVALDRALDREHFTSVVGADQDDAEMLAEELRKFPAE TVLYLGALPELSVSFLREQGFRTAWKDDPREVHFLYANSYEREAAAQLFEKWLETHPMPQ ALFTTSFALLQGVMDVTLRRDGKLPSDLAIATFGDNELLDFLQCPVLAVAQRHRDVAERV LEIVLASLDEPRKPKPGLTRIKRNLYRRGVLSRS >RBTR_KLEAE RIBITOL (RBT) OPERON REPRESSOR. MKKITIYDLAELSGVSASAVSAILNGNWKKRRISAKLAEKVTRIAEEQGYAINRQASMLR SKKSHVIGMIIPKYDNRYFGSIAERFEEMARERGLLPIITCTRRRPELEIEAVKAMLSWQ VDWVVATGATNPDKISALCQQAGVPTVNLDLPGSLSPSVISDNYGGAKALTHKILANSAR RRGELAPLTFIGGRRATITPASVYAASTMRIASWGLACRRRIFWLPAIRKATLRTACRSG LAARRRCCRGYLLTRRYPWKGLCAGCRRWV
>CCPA_BACME GLUCOSE-RESISTANCE AMYLASE REGULATOR (CATABOLITE CONTROL PROTEIN). GTGAACGTAACAATTTATGATGTAGCAAGGGAAGCAAGCGTGTCGATGGCAACGGTTTCT CGTGTGGTAAACGGAAATCCAAATGTAAAACCATCAACTAGAAAAAAAGTATTAGAAACA ATTGAAAGACTAGGCTATCGTCCGAACGCAGTAGCGCGTGGATTAGCAAGTAAAAAAACA ACGACAGTAGGAGTTATCATTCCTGATATTTCAAATATTTTCTATGCAGAGTTAGCGCGT GGAATCGAAGATATTGCAACAATGTACAAATATAATATCATCTTAAGTAACTCCGATCAA AATCAAGATAAAGAACTTCACCTTTTAAATAACATGCTTGGTAAACAAGTAGACGGAATC ATCTTCATGAGTGGGAATGTAACGGAAGAACACGTAGAAGAGCTAAAAAAATCACCGGTT CCAGTTGTCCTTGCAGCATCAATCGAATCAACTAACCAAATCCCATCTGTAACTATTGAT TATGAACAAGCAGCTTTTGATGCAGTGCAATCACTAATTGACAGCGGTCATAAAAATATT GCATTCGTTTCAGGTACGTTAGAAGAACCGATCAATCATGCGAAAAAAGTAAAAGGGTAC AAGCGTGCTCTTACGGAAAGCGGATTGCCTGTACGTGATTCTTATATTGTAGAAGGAGAC TACACGTACGATTCAGGTATTGAAGCGGTTGAAAAACTATTAGAAGAAGATGAAAAACCA ACTGCTATTTTCGTTGGAACGGATGAAATGGCATTAGGCGTTATTCACGGGGCACAAGAC CGCGGGTTGAATGTACCAAACGATCTAGAAATTATCGGTTTTGATAACACAAGACTTTCA ACAATGGTTCGTCCTCAGTTAACATCTGTTGTACAGCCAATGTATGATATTGGTGCAGTA GCGATGCGTCTCTTAACAAAATACATGAACAAAGAAACGGTAGACAGCAGCATTGTACAG CTTCCTCACCGCATCGAGTTCAGACAATCAACAAAATAA >CCPA_BACSU GLUCOSE-RESISTANCE AMYLASE REGULATOR (CATABOLITE CONTROL PROTEIN). ATGAGCAATATTACGATCTACGATGTAGCGAGAGAAGCTAATGTAAGCATGGCAACCGTT TCCCGTGTCGTGAACGGCAACCCGAATGTAAAACCGACAACGAGGAAAAAAGTCTTGGAA GCCATTGAACGTCTCGGTTACCGTCCAAACGCGGTGGCAAGAGGGCTGGCAAGTAAAAAA ACAACAACTGTAGGTGTCATCATTCCCGATATCTCAAGCATTTTCTATTCAGAGCTTGCG CGCGGAATTGAAGATATCGCGACAATGTATAAATACAATATTATTTTGAGCAACTCTGAC CAAAACATGGAGAAAGAGCTGCACTTGTTAAACACAATGCTCGGCAAACAAGTGGACGGC ATCGTGTTTATGGGCGGAAACATTACGGACGAGCATGTGGCGGAATTTAAGCGTTCTCCA GTGCCGATTGTACTTGCCGCTTCTGTAGAAGAGCAGGAGGAAACACCGTCAGTCGCTATC GATTACGAACAGGCGATTTATGATGCCGTGAAGCTTTTGGTTGATAAAGGACATACAGAC ATCGCGTTCGTTTCCGGACCAATGGCAGAACCGATCAACCGTTCGAAAAAACTCCAAGGC TACAAACGTGCGCTTGAAGAAGCGAACCTTCCGTTTAATGAACAATTTGTAGCTGAAGGG GATTACACATATGATTCCGGACTCGAAGCACTGCAGCATCTGATGAGCCTGGATAAAAAA CCGACAGCCATTCTTTCTGCAACTGATGAAATGGCACTCGGCATTATCCATGCCGCTCAG GATCAGGGCTTATCCATTCCGGAGGATCTCGACATTATCGGTTTTGATAATACAAGATTA AGCCTCATGGTTCGTCCTCAGCTTTCAACAGTTGTTCAGCCGACATATGATATCGGCGCC GTTGCGATGAGACTGCTGACGAAGCTCATGAATAAAGAGCCGGTTGAAGAGCATATCGTC GAACTGCCGCACCGTATAGAGCTTAGAAAGTCAACCAAGTCATAA >CCPA_STRMU PROBABLE CATABOLITE CONTROL PROTEIN A. ATGAATACAGATGATACCATTACAATTTATGATGTTGCCCGTGAAGCGGGAGTGTCCATG GCAACTGTCAGCCGTGTTGTGAATGGAAATAAAAATGTCAAAGAGAATACCCGCAAAAAA GTCCTAGAAGTCATTGACCGTCTTGATTATCGGCCAAATGCTGTGGCGCGTGGTTTGGCA AGTAAGAAAACGACTACGGTAGGTGTGGTTATCCCTAACATTGCTAATGCTTATTTTTCT ATTTTAGCTAAGGGAATTGATGACATTGCAACCATGTATAAATATAATATTGTACTGGCT TCAAGTGATGAAGATGACGATAAGGAAGTCAATGTTATCAATACTTTATTTGCTAAACAG GTTGATGGTATTATTTTTATGGGACATCATTTAACTGAAAAAATTCGCGCTGAATTTTCA CGAGCACGGACACCGGTTGTTTTATCAGGTACTGTAGATTTGGAGCATCAACTCCCCAGT GTTAATATTGATCATAGTAAGGCAGCACAAGATGCCGTAGCTTTATTGGCCAAACATCAT GATAAGATTGCTTTTGTATCGGGTCCCCTTATTGATGATATCAATGGCAAGGTACGTCTG GCTGGTTATAAAGAAGGCCTGAAAAAGAAAGGATTGCCTTTCAAAGAAGGACTTGTTTTT GAAGCTCAATATAAGTATCAAGAAGGATATCAGTTAGCGCAGCGTGTCATTAATTCAGGC GCAACAGCTGCTTATGTTGCTGAGGATGAGTTGGCTGCTGGGCTGTTAAATGGTTTGTTT GCTGCTGGTAGGAAAGTCCCAGAAGACTTTGAAATTATCACGAGTAATGACTCTACTATT GCGCTTTATACTCGTCCTAATATGACATCTATCAGTCAGCCGATTTATGATTTAGGAGCA GTTGCTATGCGCATGTTAACAAAGATTATGAACAAGGAAGAATTGGAAGAAAAAGAAATT GTTCTTAATCATGGTATTAAAAAACGTGGGACAACTAAGTAA >DEGA_BACSU DEGRADATION ACTIVATOR. ATGAAAACAACAATTTACGATGTGGCAAAGGCGGCGGGTGTTTCGATCACAACTGTGTCC CGTGTGATAAACAATACGGGGAGAATCAGCGATAAAACACGGCAGAAGGTCATGAATGTC ATGAATGAAATGGCATACACGCCCAATGTCCACGCCGCGGCGTTAACGGGAAAACGAACG AATATGATCGCTCTCGTGGCGCCTGATATTTCAAATCCGTTTTACGGCGAACTGGCCAAA AGCATTGAGGAAAGAGCGGATGAGCTCGGTTTTCAAATGTTGATTTGCAGCACCGATTAC GATCCGAAAAAAGAAACAAAGTATTTTTCTGTGCTGAAACAGAAAAAGGTGGATGGCATT ATTTTTGCAACAGGGATTGAAAGCCATGACAGTATGTCTGCTTTGGAGGAAATCGCCAGT GAACAAATTCCGATTGCCATGATTTCTCAGGATAAGCCGCTTCTTCCGATGGATATTGTT GTGATAGACGACGTTCGTGGCGGATATGAGGCTGCCAAGCATCTTCTGTCACTCGGCCAC ACGAACATCGCCTGCATTATCGGAGACGGGTCAACGACAGGCGAAAAAAATAGAATCAAA GGCTTCCGTCAGGCGATGGAGGAAGCGGGCGTGCCCATTGATGAATCACTTATCATCCAG ACGCGGTTTTCCTTGGAAAGCGGCAAGGAAGAAGCGGGAAAATTGCTCGACAGAAATGCT CCGACTGCTATTTTTGCCTTCAACGACGTATTGGCTTGTGCCGCCATACAAGCTGCGAGA ATAAGAGGCATAAAAGTGCCGGATGATCTTTCTATCATTGGTTTTGATAATACGATACTC GCAGAAATGGCGGCTCCGCCCCTGACAACCGTAGCCCAGCCGATAAAAGAGATGGGGGCG GAGCGTCATCGAACTGCTGGCAGAAGCAATAGAGGAAAACGAAAGGCGAAACAAAAAATA GTGCTCCCGCCTGAGCTTGTAGTCAGACATTCTACATCACCGCTCAACACATGA >FRUR_ECOLI FRUCTOSE REPRESSOR. GTGAAACTGGATGAAATCGCTCGGCTGGCGGGAGTGTCGCGGACCACTGCAAGCTATGTT ATTAACGGCAAAGCGAAGCAATACCGTGTGAGCGACAAAACCGTTGAAAAAGTCATGGCT GTGGTGCGTGAGCACAATTACCACCCGAACGCCGTGGCAGCTGGGCTTCGTGCTGGACGC ACACGTTCTATTGGTCTTGTGATCCCCGATCTGGAGAACACCAGCTATACCCGCATCGCT AACTATCTTGAACGCCAGGCGCGGCAACGGGGTTATCAACTGCTGATTGCCTGCTCAGAA GATCAGCCAGACAACGAAATGCGGTGCATTGAGCACCTTTTACAGCGTCAGGTTGATGCC ATTATTGTTTCGACGTCGTTGCCTCCTGAGCATCCTTTTTATCAACGCTGGGCTAACGAC CCGTTCCCGATTGTCGCGCTGGACCGCGCCCTCGATCGTGAACACTTCACCAGCGTGGTT GGTGCCGATCAGGATGATGCCGAAATGCTGGCGGAAGAGTTACGTAAGTTTCCCGCCGAG ACGGTGCTTTATCTTGGTGCGCTACCGGAGCTTTCTGTCAGCTTCCTGCGTGAACAAGGT TTCCGTACTGCCTGGAAAGATGATCCGCGCGAAGTGCATTTCCTGTATGCCAACAGCTAT GAGCGGGAGGCGGCTGCCCAGTTATTCGAAAAATGGCTGGAAACGCATCCGATGCCGCAG GCGCTGTTCACAACGTCGTTTGCGTTGTTGCAAGGAGTGATGGATGTCACGCTGCGTCGC GACGGCAAACTGCCTTCTGACCTGGCAATTGCCACCTTTGGCGATAACGAACTGCTCGAC TTCTTACAGTGTCCGGTGCTGGCAGTGGCTCAACGTCACCGCGATGTCGCAGAGCGTGTG CTGGAGATTGTCCTGGCAAGCCTGGACGAACCGCGTAAGCCAAAACCTGGTTTAACGCGC ATTAAACGTAATCTCTATCGCCGCGGCGTGCTCAGCCGTAGCTAA >RBTR_KLEAE RIBITOL (RBT) OPERON REPRESSOR. ATGAAGAAGATAACGATTTACGACCTGGCGGAACTTTCCGGCGTTTCGGCGAGCGCGGTG AGCGCTATCCTCAACGGTAACTGGAAAAAGCGCCGCATCAGCGCCAAGCTTGCGGAAAAG GTGACGCGGATTGCCGAGGAGCAGGGCTATGCGATTAACCGTCAGGCCAGCATGCTGCGC AGTAAAAAATCACACGTCATCGGTATGATTATCCCCAAATATGATAACCGCTACTTCGGT TCCATCGCCGAACGCTTTGAGGAGATGGCCCGCGAGCGCGGCCTGCTGCCGATTATCACC TGTACGCGCCGGCGTCCGGAACTGGAGATCGAAGCGGTAAAGGCGATGCTCTCCTGGCAG GTTGACTGGGTGGTCGCGACCGGGGCGACCAATCCGGATAAAATTTCCGCGCTATGCCAG CAGGCGGGCGTGCCAACGGTCAATCTCGACCTGCCGGGCTCTCTCTCGCCGTCGGTGATT TCGGATAACTACGGCGGCGCGAAAGCGTTGACTCATAAGATCCTGGCTAATAGCGCCCGC CGCCGCGGAGAGCTGGCGCCGCTGACCTTTATCGGCGGGCGCAGAGCGACCATAACACCA GCGAGCGTTTACGCGGCTTCCACGATGCGCATCGCGAGCTGGGGCTTAGCGTGCCGCAGG CGAATATTCTGGCTCCCGGCTATTCGAAAGGCCACGTTGAGGACTGCCTGCAGGAGCGGT TTGGCAGCGAGAAGACGCTGTTGCAGGGGATATTTGTTAACTCGACGATATCCCTGGAAG GGGTTGTGCGCTGGCTGTCGCAGGTGGGTCTGA
All sequence names must be different !
Sequences must be in Pearson/FASTA format :
>Sequence_identifier1 comments_or_not (residues) >Sequence_identifier2 comments_or_not (residues) ...
or in Pearson/FASTA single pipe format :
>lcl|Sequence_identifier1 comments_or_not (residues) >lcl|Sequence_identifier2 comments_or_not (residues) ...
or in Pearson/FASTA double pipe format :
>gnl|database_identifier|Sequence_identifier1 comments_or_not (residues) >gnl|database_identifier|Sequence_identifier2 comments_or_not (residues) ... In this case NPS@ retrieve database_identifier and sequence_identifier. If the database_identifier is known by NPS@, a link on database will be proposed.
ALLOWED CHARACTERS :
CODES :
A alanine B aspartate or asparagine C cystine D aspartate E glutamate F phenylalanine G glycine H histidine I isoleucine K lysine L leucine M methionine N asparagine P proline Q glutamine R arginine S serine T threonine U selenocysteine V valine W tryptophan X any Y tyrosine Z glutamate or glutamine
A adenosine B G T C C cytidine D G A T G guanine H A C T K G T (keto) M A C (amino) N A G C T (any) R G A (purine) S G C (strong) T thymidine U uridine V G C A W A T (weak) Y T C (pyrimidine)
SEQUENCE IDENTIFIERS :
The sequence identifiers must have at least six characters.
The allowed characters are : ABCDEFGHIJKLMNOPQRSTUVWXYZabcdefghijklmnopqrstuvwxyz_0123456789
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