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July 22, 2024: NPS@ updated (see NEWS).

July 25 17h00 (Paris Time) - July 26 12h00 (Paris Time): NPS@ service interruption.

Coiled-coil prediction
The coiled-coil prediction is done with the algorithm of Lupas et al.. The probability that a residue in a protein is part of a coiled-coil structure was assessed by comparison of its flanking sequences with sequences of known coiled-coil proteins.

Availability in NPS@
This method is available :

• from a dedicated page
• when you work with a sequence in NPS@

Parameters
You can set the scoring matrix to use for the computation.
A weight of 2.5 can be given for positions a and d.
You can see the result with a graphic or with colored heptads.

NPS@ coiled-coil prediction output examples
In both case you can see :

• The result
• A link on result text file
• Parameters used

References

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