Network Protein Sequence Analysis (NPSA, NPS@) image
This site is a fork of the original PRABI NPS@ server


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June 22, 2024: NPS@ updated (see NEWS).


Coiled-coil prediction help

Coiled-coil prediction
The coiled-coil prediction is done with the algorithm of Lupas et al.. The probability that a residue in a protein is part of a coiled-coil structure was assessed by comparison of its flanking sequences with sequences of known coiled-coil proteins.

Availability in NPS@
This method is available :

Parameters
You can set the scoring matrix to use for the computation.
A weight of 2.5 can be given for positions a and d.
You can see the result with a graphic or with colored heptads.

NPS@ coiled-coil prediction output examples
In both case you can see :

Graphical output : Colored heptad output :

References


Last modification time : Mon Dec 5 14:15:31 2022. Current time : Sun Jun 23 04:34:07 2024. User : public@3.236.116.27.

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