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June 22, 2024: NPS@ updated (see NEWS).


HMMER 3 profile HMM HMMBUILD help

A brief introduction to HMMBUILD
The program HMMBUILD, belonging to the HMMER package, generates a profile HMM (hidden Markov models) from a multiple sequence alignment. Profile HMMs are statistical models of the primary structure consensus of a sequence family. A profile HMM can typically be used in homology detection by comparing a query profile HMM against a DNA or protein sequence library.
For further details, see the HMMER homepage.

Availability in NPS@
HMMBUILD is available :

Parameters
The user can select among HMMBUILD parameters to adjust profile building (see HMMER User's Guide):

NPS@ HMMBUILD output
The HMMBUILD profile allows you to continue your analysis with a search against a protein sequence database thanks to HMMSEARCH.

References


Last modification time : Fri Dec 8 18:07:00 2023. Current time : Sun Jun 23 04:15:58 2024. User : public@3.236.116.27.

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