Network Protein Sequence Analysis (NPSA, NPS@) image
This site is a fork of the original PRABI NPS@ server


June 22, 2024: NPS@ updated (see NEWS).

HMMER 3 profile HMM HMMSEARCH help

A brief introduction to HMMSEARCH
The program HMMSEARCH, belonging to the HMMER package, compares a query profile HMM (hidden Markov models) against a sequence library. It generates a list of significantly similar sequence matches. This tool is very useful for homology detection, for the detection of motifs in protein sequences...
For further details, see the HMMER homepage.

Availability in NPS@
HMMSEARCH is available :

The user can select among HMMSEARCH parameters to adjust profile search (see HMMER User's Guide):

NPS@ HMMSEARCH output example
The NPS@ HMMSEARCH output is divided into four parts.


Last modification time : Tue Dec 19 16:59:30 2023. Current time : Sun Jun 23 04:25:44 2024. User : public@

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