This site is a fork of the original NPS@ server

[HOME] [DESCRIPTION] [HELP] [NEWS] [CONTACT] [Geno3D]

April 9th, 2023: NPS@ is up and running since 25 years (see NEWS).

Upload your own Pearson/FASTA sequence file.

Sequence homology search :

• against protein sequence databases :
  • BLAST (query protein (blastp) or nucleotide (blastx) sequence)
  • PSI-BLAST (query protein sequence)
  • FASTA (query protein sequence)
  • SSEARCH (query protein sequence)
• against nucleotide sequence databases :
  • BLAST (query protein (tblastn) or nucleotide (blastn, tblastx) sequence)
  • FASTA (query nucleotide sequence)
  • SSEARCH (query nucleotide sequence)

Multiple sequence alignment :

• with protein sequences :
  • KALIGN
  • MAFFT
  • MUSCLE
• with nucleotide sequences :
  • KALIGN
  • MAFFT
  • MUSCLE

Protein secondary structure prediction :

• using one method:
  • DSC
  • GOR IV
  • MLRC
  • PREDATOR
  • SIMPA96
  • SOPMA
• combining several methods

Miscellaneous protein primary structure analysis :

• Amino-acid composition
• Coiled-coil prediction
• ColorSeq: color protein sequence
• HTH: Helix-turn-helix DNA-binding motifs detection

Geno3D : comparative modelling of protein 3-D structure.

References about databases and software integrated into NPS@.

Acknowledgments :

• All Bioinformatics teams for their database and software developments
• Databases (ENA, Ensembl, UniProtKB, PDB, AlphaFoldDB) are updated from European Bioinformatics Insitute (EBI)
• ESM Metagenomic Atlas from the original server

About NPS@ :

• Description
• Help
• News
• Contact
• Usage statistics

© 1998-2023

Legal notice