This site is a fork of the original PRABI NPS@ server
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[Geno3D]
July 30, 2024: NPS@ updated (see NEWS).
Upload your own Pearson/FASTA sequence file.
Sequence homology search :
- against protein sequence databases :
- BLAST (query protein (blastp) or nucleotide (blastx) sequence)
- PSI-BLAST (query protein sequence)
- FASTA (query protein sequence)
- SSEARCH (query protein sequence)
- HMMSEARCH (query protein profile, HMMER 3 format)
- against nucleotide sequence databases :
- BLAST (query protein (tblastn) or nucleotide (blastn, tblastx) sequence)
- FASTA (query nucleotide sequence)
- SSEARCH (query nucleotide sequence)
Multiple sequence alignment :
- with protein sequences :
- with nucleotide sequences :
Profile HMM building :
- HMMBUILD: build a profile HMM with HMMER 3
Protein secondary structure prediction :
Miscellaneous protein primary structure analysis :
Geno3D : comparative modelling of protein 3-D structure.
References about databases and software integrated into NPS@.
Acknowledgments :
About NPS@ :
Last modification time : Mon Feb 5 16:52:13 2024. Current time : Wed Oct 16 04:02:20 2024. User : public@34.239.150.167.