NPS@ at CRCL is a fork of the original NPS@ server

What is NPS@ ?

Upload your own Pearson/FASTA sequence file.

Sequence homology search against protein sequence databases :

• BLAST search (query protein (blastp) or nucleotide (blastx) sequence)
• PSI-BLAST search (query protein sequence)
• FASTA search (query protein sequence)
• SSEARCH search (query protein sequence)

Sequence homology search against nucleotide sequence databases :

• BLAST search (query protein (tblastn) or nucleotide (blastn, tblastx) sequence)
• FASTA search (query nucleotide sequence)

Multiple sequence alignment:

• Clustal W with Protein sequences
• Clustal W with DNA sequences
• Multalin with Protein sequences
• Multalin with DNA sequences

Protein secondary structure prediction :

• Methods:
  • DSC
  • GOR IV
  • MLRC
  • PREDATOR
  • SIMPA96
  • SOPMA
• Secondary structure consensus prediction

Miscellaneous primary structure analysis :

• Amino-acid composition
• Coiled-coil prediction
• ColorSeq: color protein sequence
• HTH: Helix-turn-helix DNA-binding motifs detection

News about NPS@.

Acknowledgments :

• Databases are updated from EBI (United Kingdom)
  
• All Bioinformatics teams for their software developments.
  
• Main references about software and databases available in this server
  
• Number of jobs performed by this server

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